Bordered Floer homology and the spectral sequence of a branched double cover II: the spectral sequences agree

Given a link in the three-sphere, Ozsv\'ath and Szab\'o showed that there is a spectral sequence starting at the Khovanov homology of the link and converging to the Heegaard Floer homology of its branched double cover. The aim of this paper is to explicitly calculate this spectral sequence in terms of bordered Floer homology. There are two primary ingredients in this computation: an explicit calculation of bimodules associated to Dehn twists, and a general pairing theorem for polygons. The previous part (arXiv:1011.0499) focuses on computing the bimodules; this part focuses on the pairing theorem for polygons, in order to prove that the spectral sequence constructed in the previous part agrees with the one constructed by Ozsv\'ath and Szab\'o.Comment: 85 pages, 19 figures, v3: Version to appear in Journal of Topolog

Heegaard Floer homology as morphism spaces

In this paper we prove another pairing theorem for bordered Floer homology. Unlike the original pairing theorem, this one is stated in terms of homomorphisms, not tensor products. The present formulation is closer in spirit to the usual TQFT framework, and allows a more direct comparison with Fukaya-categorical constructions. The result also leads to various dualities in bordered Floer homology.Comment: 57 pages, 14 figures; v2: many updates, including changing orientation conventions, which changed the signs in many theorem

Bordered Floer homology and the spectral sequence of a branched double cover I

Given a link in the three-sphere, Z. Szab\'o and the second author constructed a spectral sequence starting at the Khovanov homology of the link and converging to the Heegaard Floer homology of its branched double-cover. The aim of this paper and its sequel is to explicitly calculate this spectral sequence, using bordered Floer homology. There are two primary ingredients in this computation: an explicit calculation of filtered bimodules associated to Dehn twists and a pairing theorem for polygons. In this paper we give the first ingredient, and so obtain a combinatorial spectral sequence from Khovanov homology to Heegaard Floer homology; in the sequel we show that this spectral sequence agrees with the previously known one.Comment: 45 pages, 16 figures. v2: Published versio

Computing HF^ by factoring mapping classes

Bordered Heegaard Floer homology is an invariant for three-manifolds with boundary. In particular, this invariant associates to a handle decomposition of a surface F a differential graded algebra, and to an arc slide between two handle decompositions, a bimodule over the two algebras. In this paper, we describe these bimodules for arc slides explicitly, and then use them to give a combinatorial description of HF^ of a closed three-manifold, as well as the bordered Floer homology of any 3-manifold with boundary.Comment: 106 pages, 46 figure

Bimodules in bordered Heegaard Floer homology

Bordered Heegaard Floer homology is a three-manifold invariant which associates to a surface F an algebra A(F) and to a three-manifold Y with boundary identified with F a module over A(F). In this paper, we establish naturality properties of this invariant. Changing the diffeomorphism between F and the boundary of Y tensors the bordered invariant with a suitable bimodule over A(F). These bimodules give an action of a suitably based mapping class group on the category of modules over A(F). The Hochschild homology of such a bimodule is identified with the knot Floer homology of the associated open book decomposition. In the course of establishing these results, we also calculate the homology of A(F). We also prove a duality theorem relating the two versions of the 3-manifold invariant. Finally, in the case of a genus one surface, we calculate the mapping class group action explicitly. This completes the description of bordered Heegaard Floer homology for knot complements in terms of the knot Floer homology.Comment: 153 pages, 29 figures; v4: Address referee comment

Grid homology for knots and links

Knot theory is a classical area of low-dimensional topology, directly connected with the theory of three-manifolds and smooth four-manifold topology. In recent years, the subject has undergone transformative changes thanks to its connections with a number of other mathematical disciplines, including gauge theory; representation theory and categorification; contact geometry; and the theory of pseudo-holomorphic curves. Starting from the combinatorial point of view on knots using their grid diagrams, this book serves as an introduction to knot theory, specifically as it relates to some of the a